Publications

Preprints

• A. Kirkley, Fast nonparametric inference of network backbones for graph sparsification. Preprint arXiv:2409.06417 (2024). Paper. Code.

• M. Jerdee, A. Kirkley, and M. E. J. Newman, Normalized mutual information is a biased measure for classification and community detection. Preprint arXiv:2307.01282 (2023). Paper.

Peer Reviewed Journal Publications

• M. Jerdee, A. Kirkley, and M. E. J. Newman, Mutual information and the encoding of contingency tables. Physical Review E [Editor’s Suggestion] 110, 064306 (2024). Paper. Code.

• A. Kirkley and Baiyue He, PANINIpy: Package of Algorithms for Nonparametric Inference with Networks In Python. Journal of Open Source Software 9, 7312 (2024). Paper. Repository.

• H. Felippe, F. Battiston, and A. Kirkley^*, Network mutual information measures for graph similarity. Communications Physics 7, 335 (2024). Paper. Code.

• S. Morel-Balbi and A. Kirkley^*, Bayesian regionalization of urban mobility networks. Physical Review Research 6, 033307 (2024). Paper. Code.

• L. Hébert-Dufresne, J.G. Young, A. Daniels, A. Kirkley, and A. Allard, Network compression with configuration models and the minimum description length. Physical Review E 110, 034305 (2024). Paper.

• A. Kirkley, Inference of dynamic hypergraph representations in temporal interaction data. Physical Review E 109, 054306 (2024). Paper. Code.

• A. Kirkley, Identifying hubs in directed networks. Physical Review E [Editor’s Suggestion] 109, 034310 (2024). Paper. Code.

• M. Jerdee, A. Kirkley, and M. E. J. Newman, Improved estimates for the number of non-negative integer matrices with given row and column sums. Proceedings of the Royal Society A 480, 20230470 (2024). Paper. Code.

• B. Poudyal, G. Ghoshal, and A. Kirkley^*, Characterizing network circuity among heterogeneous urban amenities. Journal of the Royal Society Interface 20, 20230296 (2023). Paper.

• G. T. Cantwell, A. Kirkley, and F. Radicchi, Heterogeneous message passing for heterogeneous networks. Physical Review E 108, 034310 (2023). Paper. Code.

• T. P. Peixoto and A. Kirkley^*, Implicit models, latent compression, intrinsic biases, and cheap lunches in community detection. Physical Review E 108, 024309 (2023). Paper.

• A. Kirkley^*, A. Rojas, M. Rosvall, and J-G. Young, Compressing network populations with modal networks reveals structural diversity. Communications Physics 6, 148 (2023). Paper. Code.

• A. Kirkley, Spatial regionalization based on optimal information compression. Communications Physics 5, 249 (2022). Paper. Code.

• S. Mimar, D. Soriano-Paños, A. Kirkley, H. Barbosa, A. Sadilek, A. Arenas, J. Gómez-Gardeñes, and G. Ghoshal, Connecting intercity mobility with urban welfare. PNAS Nexus 1, pgac178 (2022). Paper.

• J. Aguilar, A. Bassolas, G. Ghoshal, S. Hazarie, A. Kirkley, M. Mazzoli, S. Meloni, S. Mimar, V. Nicosia, J. J. Ramasco, and A. Sadilek, Impact of urban structure on infectious disease spreading. Scientific Reports 12, 3816 (2022). Paper.

• A. Kirkley^* and M. E. J. Newman, Representative community divisions of networks. Communications Physics 5, 40 (2022). Paper. Code.

• J-G. Young, A. Kirkley^†, and M. E. J. Newman, Clustering of heterogeneous populations of networks. Physical Review E 105, 014312 (2022). Paper. Code.

• G. T. Cantwell, A. Kirkley, and M. E. J. Newman, The friendship paradox in real and model networks. Journal of Complex Networks 9, cnab011 (2021). Paper.

• A. Kirkley^*, G. T. Cantwell, and M. E. J. Newman, Belief propagation for networks with loops. Science Advances 7, eabf1211 (2021). Paper. Code.

• S. Feng and A. Kirkley^†,*, Integrating online and offline data for crisis management: Online geolocalized emotion, policy response, and local mobility during the COVID crisis. Scientific Reports 11, 8514 (2021). Paper. Data.

• A. Kirkley, Information theoretic network approach to socioeconomic correlations. Physical Review Research 2, 043212 (2020). Paper.

• A. A. Klishin, A. Kirkley, D. J. Singer, and G. van Anders, Robust design from systems physics. Scientific Reports 10, 14334 (2020). Paper.

• S. Feng and A. Kirkley^†,*, Mixing patterns in interdisciplinary co-authorship networks at multiple scales. Scientific Reports 10, 7731 (2020). Paper.

• A. Kirkley^* and M. E. J. Newman, Balance in signed networks. Physical Review E 99, 012320 (2019). Paper.

• A. Kirkley, H. Barbosa, M. Barthelemy, and G. Ghoshal, From the betweenness centrality in street networks to structural invariants in random planar graphs. Nature Communications 9, 2501 (2018). Paper.

^† denotes co-first authorship, ^* denotes corresponding authorship